4FEW Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP2 date 2012-05-30
authors Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Leo, R.Di., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., CSGID, Center.for.Structural.Genomics.of.Infectious.Diseases.
compound source
symmetry
R_factor
R_Free 0.2158
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.98
ligand ACT, CL, KAN, MSE, NA, PEG, PP2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance., Stogios PJ, Spanogiannopoulos P, Evdokimova E, Egorova O, Shakya T, Todorovic N, Capretta A, Wright GD, Savchenko A, Biochem J. 2013 Jun 12. PMID:23758273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (569 Kb) [Save to disk]
  • Biological Unit Coordinates (4few.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (4few.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (4few.pdb3.gz) 97 Kb
  • Biological Unit Coordinates (4few.pdb4.gz) 101 Kb
  • Biological Unit Coordinates (4few.pdb5.gz) 96 Kb
  • Biological Unit Coordinates (4few.pdb6.gz) 101 Kb
  • Biological Unit Coordinates (4few.pdb7.gz) 187 Kb
  • Biological Unit Coordinates (4few.pdb8.gz) 191 Kb
  • Biological Unit Coordinates (4few.pdb9.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 4FEW
  • CSU: Contacts of Structural Units for 4FEW
  • Structure Factors (1364 Kb)
  • Retrieve 4FEW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FEW from S2C, [Save to disk]
  • Re-refined 4few structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FEW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FEW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FEW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4few_D] [4few_F] [4few] [4few_C] [4few_B] [4few_E] [4few_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FEW
  • Community annotation for 4FEW at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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