4FF7 Structure of C126S mutant of Saccharomyces cerevisiae triosephosphate isomerase date 2012-05-31
authors Rodriguez-Romero, A., Hernandez-Santoyo, A.
compound source
symmetry
R_factor
R_Free 0.2120
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.86
ligand GOL, NA, PGA, PO4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEffects of a buried cysteine-to-serine mutation on yeast triosephosphate isomerase structure and stability., Hernandez-Santoyo A, Dominguez-Ramirez L, Reyes-Lopez CA, Gonzalez-Mondragon E, Hernandez-Arana A, Rodriguez-Romero A, Int J Mol Sci. 2012;13(8):10010-21. doi: 10.3390/ijms130810010. Epub 2012 Aug 10. PMID:22949845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (4ff7.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 4FF7
  • CSU: Contacts of Structural Units for 4FF7
  • Structure Factors (578 Kb)
  • Retrieve 4FF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FF7 from S2C, [Save to disk]
  • Re-refined 4ff7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FF7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FF7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ff7] [4ff7_A] [4ff7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FF7
  • Community annotation for 4FF7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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