4FK8 Crystal structure of FERREDOXIN-NADP REDUCTASE from burkholderia thailandensis E264 with bound FAD date 2012-06-12
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand FAD enzyme
Gene BTH
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCombining functional and structural genomics to sample the essential Burkholderia structome., Baugh L, Gallagher LA, Patrapuvich R, Clifton MC, Gardberg AS, Edwards TE, Armour B, Begley DW, Dieterich SH, Dranow DM, Abendroth J, Fairman JW, Fox D 3rd, Staker BL, Phan I, Gillespie A, Choi R, Nakazawa-Hewitt S, Nguyen MT, Napuli A, Barrett L, Buchko GW, Stacy R, Myler PJ, Stewart LJ, Manoil C, Van Voorhis WC, PLoS One. 2013;8(1):e53851. doi: 10.1371/journal.pone.0053851. Epub 2013 Jan 31. PMID:23382856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (4fk8.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (4fk8.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 4FK8
  • CSU: Contacts of Structural Units for 4FK8
  • Structure Factors (525 Kb)
  • Retrieve 4FK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FK8 from S2C, [Save to disk]
  • Re-refined 4fk8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FK8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FK8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fk8_A] [4fk8] [4fk8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FK8
  • Community annotation for 4FK8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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