4FN0 Crystal structure of mouse nectin-2 extracellular fragment D1-D2, 2nd crystal form date 2012-06-18
authors Harrison, O.J., Brasch, J., Shapiro, L.
compound source
symmetry
R_factor
R_Free 0.29333
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.35
ligand BMA, FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceNectin ectodomain structures reveal a canonical adhesive interface., Harrison OJ, Vendome J, Brasch J, Jin X, Hong S, Katsamba PS, Ahlsen G, Troyanovsky RB, Troyanovsky SM, Honig B, Shapiro L, Nat Struct Mol Biol. 2012 Aug 19. doi: 10.1038/nsmb.2366. PMID:22902367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (4fn0.pdb1.gz) 154 Kb
  • Biological Unit Coordinates (4fn0.pdb2.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 4FN0
  • CSU: Contacts of Structural Units for 4FN0
  • Structure Factors (254 Kb)
  • Retrieve 4FN0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FN0 from S2C, [Save to disk]
  • Re-refined 4fn0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FN0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FN0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FN0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fn0_B] [4fn0_A] [4fn0] [4fn0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4FN0: [IG_like] [IGv ] by SMART
    • Other resources with information on 4FN0
  • Community annotation for 4FN0 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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