4G1N PKM2 in complex with an activator date 2012-07-10
authors Kung, C., Hixon, J., Dang, L., DeLaBarre, B., Qian, K.C.
compound source
symmetry
R_factor
R_Free 0.2662
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand MG, NZT, OXL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSmall Molecule Activation of PKM2 in Cancer Cells Induces Serine Auxotrophy., Kung C, Hixon J, Choe S, Marks K, Gross S, Murphy E, Delabarre B, Cianchetta G, Sethumadhavan S, Wang X, Yan S, Gao Y, Fang C, Wei W, Jiang F, Wang S, Qian K, Saunders J, Driggers E, Woo HK, Kunii K, Murray S, Yang H, Yen K, Liu W, Cantley LC, Vander Heiden MG, Su SM, Jin S, Salituro FG, Dang L, Chem Biol. 2012 Sep 21;19(9):1187-98. doi: 10.1016/j.chembiol.2012.07.021. PMID:22999886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (4g1n.pdb1.gz) 321 Kb
  • LPC: Ligand-Protein Contacts for 4G1N
  • CSU: Contacts of Structural Units for 4G1N
  • Structure Factors (2399 Kb)
  • Retrieve 4G1N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G1N from S2C, [Save to disk]
  • Re-refined 4g1n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G1N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G1N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G1N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g1n_A] [4g1n_C] [4g1n_B] [4g1n_D] [4g1n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4G1N
  • Community annotation for 4G1N at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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