4G2F Human EphA3 kinase domain in complex with compound 7 date 2012-07-12
authors Dong, J., Caflisch, A.
compound source
symmetry
R_factor
R_Free 0.2085
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand C07 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of a novel chemotype of tyrosine kinase inhibitors by fragment-based docking and molecular dynamics., Zhao H, Dong J, Lafleur K, Nevado C, Caflisch A, ACS Med Chem Lett. 2012 Aug 23;3(10):834-8. doi: 10.1021/ml3001984. eCollection, 2012 Oct 11. PMID:24900387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4g2f.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4G2F
  • CSU: Contacts of Structural Units for 4G2F
  • Structure Factors (407 Kb)
  • Retrieve 4G2F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G2F from S2C, [Save to disk]
  • Re-refined 4g2f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G2F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G2F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G2F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g2f_A] [4g2f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G2F: [TyrKc ] by SMART
  • Other resources with information on 4G2F
  • Community annotation for 4G2F at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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