4G5Z Crystal structure of the therapeutical antibody fragment of canakinumab in its unbound state date
authors Blech, M., Hoerer, S.
compound source
symmetry
R_factor
R_Free 0.2222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.83
Primary referenceOne Target-Two Different Binding Modes: Structural Insights into Gevokizumab and Canakinumab Interactions to Interleukin-1beta, Blech M, Peter D, Fischer P, Bauer MM, Hafner M, Zeeb M, Nar H, J Mol Biol. 2012 Oct 3. pii: S0022-2836(12)00786-3. doi:, 10.1016/j.jmb.2012.09.021. PMID:23041424
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (4g5z.pdb1.gz) 139 Kb
  • CSU: Contacts of Structural Units for 4G5Z
  • Structure Factors (709 Kb)
  • Retrieve 4G5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G5Z from S2C, [Save to disk]
  • Re-refined 4g5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G5Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g5z_H] [4g5z] [4g5z_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G5Z: [IG_like] [IGv ] by SMART
  • Other resources with information on 4G5Z
  • Community annotation for 4G5Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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