4G6F Crystal Structure of 10E8 Fab in Complex with an HIV-1 gp41 Peptide date
authors Ofek, G., Huang, J., Connors, M., Kwong, P.D.
compound source
symmetry
R_factor
R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
Primary referenceBroad and potent neutralization of HIV-1 by a gp41-specific human antibody., Huang J, Ofek G, Laub L, Louder MK, Doria-Rose NA, Longo NS, Imamichi H, Bailer RT, Chakrabarti B, Sharma SK, Alam SM, Wang T, Yang Y, Zhang B, Migueles SA, Wyatt R, Haynes BF, Kwong PD, Mascola JR, Connors M, Nature. 2012 Nov 15;491(7424):406-12. doi: 10.1038/nature11544. Epub 2012 Sep 18. PMID:23151583
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]
  • Biological Unit Coordinates (4g6f.pdb1.gz) 309 Kb
  • Biological Unit Coordinates (4g6f.pdb2.gz) 309 Kb
  • CSU: Contacts of Structural Units for 4G6F
  • Structure Factors (461 Kb)
  • Retrieve 4G6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G6F from S2C, [Save to disk]
  • Re-refined 4g6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G6F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G6F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g6f_B] [4g6f] [4g6f_D] [4g6f_L] [4g6f_H] [4g6f_P] [4g6f_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G6F: [IG_like] [IGv ] by SMART
    • Other resources with information on 4G6F
  • Community annotation for 4G6F at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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