4G7V Crystal structure of voltage sensing domain of Ci-VSP with fragment antibody (R217E, 2.5 A) date
authors Li, Q.
compound source
symmetry
R_factor
R_Free 0.2404
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CL, LDA, SIN enzyme
Gene
Ontology
ChainFunctionProcessComponent
S


Primary referenceStructural mechanism of voltage-dependent gating in an isolated voltage-sensing domain., Li Q, Wanderling S, Paduch M, Medovoy D, Singharoy A, McGreevy R, Villalba-Galea CA, Hulse RE, Roux B, Schulten K, Kossiakoff A, Perozo E, Nat Struct Mol Biol. 2014 Mar;21(3):244-52. doi: 10.1038/nsmb.2768. Epub 2014 Feb, 2. PMID:24487958
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (4g7v.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 4G7V
  • CSU: Contacts of Structural Units for 4G7V
  • Structure Factors (516 Kb)
  • Retrieve 4G7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G7V from S2C, [Save to disk]
  • Re-refined 4g7v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G7V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G7V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g7v] [4g7v_L] [4g7v_H] [4g7v_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G7V: [IG_like] [IGv ] by SMART
    • Other resources with information on 4G7V
  • Community annotation for 4G7V at PDBWiki (http://pdbwiki.org)

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