4G9H Crystal structure of glutahtione s-transferase homolog from yersinia pestis, target EFI-501894, with bound glutathione date 2012-07-23
authors Vetting, M.W., Toro, R., Bhosle, R., Obaidi, N.F.Al., Morisco, L.L., Wasserman, S.R., Sojitra, S., Washington, E., Glenn, A.Scott., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Armstrong, R.N., Gerlt, J.A., Almo, S.C., EFI, Enzyme.Function.Initiative.
compound source
symmetry
R_factor
R_Free 0.2164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand GOL, GSH enzyme
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4g9h.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 4G9H
  • CSU: Contacts of Structural Units for 4G9H
  • Structure Factors (1790 Kb)
  • Retrieve 4G9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G9H from S2C, [Save to disk]
  • Re-refined 4g9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G9H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G9H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g9h_A] [4g9h] [4g9h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4G9H
  • Community annotation for 4G9H at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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