4GK1 Crystal structure of CD23 lectin domain mutant D270A date
authors Yuan, D., Sutton, B.J., Dhaliwal, B.
compound source
symmetry
R_factor
R_Free 0.2256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.24
ligand GOL, SO4 enzyme
Primary referenceCa2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E., Yuan D, Keeble AH, Hibbert RG, Fabiane S, Gould HJ, McDonnell JM, Beavil AJ, Sutton BJ, Dhaliwal B, J Biol Chem. 2013 Jul 26;288(30):21667-77. doi: 10.1074/jbc.M113.480657. Epub, 2013 Jun 17. PMID:23775083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]
  • Biological Unit Coordinates (4gk1.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4gk1.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (4gk1.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (4gk1.pdb4.gz) 48 Kb
  • Biological Unit Coordinates (4gk1.pdb5.gz) 49 Kb
  • Biological Unit Coordinates (4gk1.pdb6.gz) 49 Kb
  • Biological Unit Coordinates (4gk1.pdb7.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4GK1
  • CSU: Contacts of Structural Units for 4GK1
  • Structure Factors (318 Kb)
  • Retrieve 4GK1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GK1 from S2C, [Save to disk]
  • Re-refined 4gk1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GK1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GK1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GK1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gk1_F] [4gk1_A] [4gk1_B] [4gk1_G] [4gk1_C] [4gk1_E] [4gk1_D] [4gk1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GK1: [CLECT ] by SMART
    • Other resources with information on 4GK1
  • Community annotation for 4GK1 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science