4GSW Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom date 2012-08-28
authors Bosch, D.E., Siderovski, D.P.
compound source
symmetry
R_factor
R_Free 0.2561
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand SO4 enzyme
Gene EHI ; EHI ; EHI ; EHI
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural determinants of ubiquitin conjugation in Entamoeba histolytica., Bosch DE, Siderovski DP, J Biol Chem. 2012 Dec 3. PMID:23209297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4gsw.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (4gsw.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 4GSW
  • CSU: Contacts of Structural Units for 4GSW
  • Structure Factors (64 Kb)
  • Retrieve 4GSW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GSW from S2C, [Save to disk]
  • Re-refined 4gsw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GSW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GSW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GSW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gsw_B] [4gsw] [4gsw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GSW: [UBQ ] by SMART
  • Other resources with information on 4GSW
  • Community annotation for 4GSW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science