4GTV Engineered RabGGTase in complex with BMS analogue 13 date
authors Guo, Z., Stigter, E.A., Bon, R.S., Waldmann, H., Blankenfeldt, W., Goody, R.S.
compound source
symmetry
R_factor
R_Free 0.21143
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 7TR, CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDevelopment of Selective, Potent RabGGTase Inhibitors., Stigter EA, Guo Z, Bon RS, Wu YW, Choidas A, Wolf A, Menninger S, Waldmann H, Blankenfeldt W, Goody RS, J Med Chem. 2012 Oct 11;55(19):8330-40. doi: 10.1021/jm300624s. Epub 2012 Oct 3. PMID:22963166
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (4gtv.pdb1.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 4GTV
  • CSU: Contacts of Structural Units for 4GTV
  • Structure Factors (719 Kb)
  • Retrieve 4GTV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GTV from S2C, [Save to disk]
  • Re-refined 4gtv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GTV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GTV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GTV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gtv_A] [4gtv_B] [4gtv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GTV
  • Community annotation for 4GTV at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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