4GYH Structure of human thymidylate synthase at high salt conditions date 2012-09-05
authors Brunn, N., Dibrov, S., Hermann, T.
compound source
symmetry
R_factor
R_Free 0.2802
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • thymidylate synthase activit...


  • Primary referenceAnalysis of mRNA recognition by human thymidylate synthase., Brunn ND, Dibrov SM, Kao MB, Ghassemian M, Hermann T, Biosci Rep. 2014 Dec 23;34(6). pii: e00168. doi: 10.1042/BSR20140137. PMID:25423174
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (4gyh.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4GYH
  • CSU: Contacts of Structural Units for 4GYH
  • Structure Factors (173 Kb)
  • Retrieve 4GYH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GYH from S2C, [Save to disk]
  • Re-refined 4gyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GYH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GYH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GYH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gyh] [4gyh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GYH
  • Community annotation for 4GYH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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