4HCP crystal structure of Burkholderia pseudomallei effector protein chbp in complex with nedd8 date 2012-10-01
authors Yao, Q., Shao, F.
compound source
symmetry
R_factor
R_Free 0.26679
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.52
ligand GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis., Yao Q, Cui J, Wang J, Li T, Wan X, Luo T, Gong YN, Xu Y, Huang N, Shao F, Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20395-400. doi:, 10.1073/pnas.1210831109. Epub 2012 Nov 21. PMID:23175788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (4hcp.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4HCP
  • CSU: Contacts of Structural Units for 4HCP
  • Structure Factors (174 Kb)
  • Retrieve 4HCP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HCP from S2C, [Save to disk]
  • Re-refined 4hcp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HCP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HCP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HCP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hcp_A] [4hcp] [4hcp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HCP: [UBQ ] by SMART
    • Other resources with information on 4HCP
  • Community annotation for 4HCP at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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