4HD8 Crystal structure of human Sirt3 in complex with Fluor-de-Lys peptide and piceatannol date 2012-10-02
authors Nguyen, G.T.T., Gertz, M., Steegborn, C.
compound source
symmetry
R_factor
R_Free 0.2405
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand FDL, IPA, PIT, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA molecular mechanism for direct sirtuin activation by resveratrol., Gertz M, Nguyen GT, Fischer F, Suenkel B, Schlicker C, Franzel B, Tomaschewski J, Aladini F, Becker C, Wolters D, Steegborn C, PLoS One. 2012;7(11):e49761. doi: 10.1371/journal.pone.0049761. Epub 2012 Nov 21. PMID:23185430
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4hd8.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4HD8
  • CSU: Contacts of Structural Units for 4HD8
  • Structure Factors (129 Kb)
  • Retrieve 4HD8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HD8 from S2C, [Save to disk]
  • Re-refined 4hd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HD8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HD8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HD8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hd8_F] [4hd8_A] [4hd8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HD8
  • Community annotation for 4HD8 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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