4HK4 Crystal structure of apo Tyrosine-tRNA ligase mutant protein date
authors Yu, Y., Zhou, Q., Dong, J., Li, J., Xiaoxuan, L., Mukherjee, A., Ouyang, H., Nilges, M., Li, H., Gao, F., Gong, W., Lu, Y., Wang, J.
compound source
symmetry
R_factor
R_Free 0.2766
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4hk4.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4HK4
  • CSU: Contacts of Structural Units for 4HK4
  • Structure Factors (172 Kb)
  • Retrieve 4HK4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HK4 from S2C, [Save to disk]
  • Re-refined 4hk4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HK4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HK4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HK4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hk4_A] [4hk4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HK4
  • Community annotation for 4HK4 at PDBWiki (http://pdbwiki.org)

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