4HQM The crystal structure of QsrR-menadione complex date
authors Ji, Q., Zhang, L., Jones, M.B., Sun, F., Deng, X., Liang, H., Brugarolas, P., Gao, N., Peterson, S.N., Lan, L., Bae, T., He, C.
compound source
symmetry
R_factor
R_Free 0.2962
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand 17Z enzyme
Primary referenceMolecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR., Ji Q, Zhang L, Jones MB, Sun F, Deng X, Liang H, Cho H, Brugarolas P, Gao YN, Peterson SN, Lan L, Bae T, He C, Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5010-5. doi:, 10.1073/pnas.1219446110. Epub 2013 Mar 11. PMID:23479646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (4hqm.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4HQM
  • CSU: Contacts of Structural Units for 4HQM
  • Structure Factors (197 Kb)
  • Retrieve 4HQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HQM from S2C, [Save to disk]
  • Re-refined 4hqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HQM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HQM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hqm_A] [4hqm_B] [4hqm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HQM
  • Community annotation for 4HQM at PDBWiki (http://pdbwiki.org)

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