4I5C The Jak1 kinase domain in complex with inhibitor date 2012-11-28
authors Fong, R., Lupardus, P.J.
compound source
symmetry
R_factor
R_Free 0.2448
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand C5I, EDO, PTR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNovel triazolo-pyrrolopyridines as inhibitors of Janus kinase 1., Hurley CA, Blair WS, Bull RJ, Chang C, Crackett PH, Deshmukh G, Dyke HJ, Fong R, Ghilardi N, Gibbons P, Hewitt PR, Johnson A, Johnson T, Kenny JR, Kohli PB, Kulagowski JJ, Liimatta M, Lupardus PJ, Maxey RJ, Mendonca R, Narukulla R, Pulk R, Ubhayakar S, van Abbema A, Ward SI, Waszkowycz B, Zak M, Bioorg Med Chem Lett. 2013 Jun 15;23(12):3592-8. doi: 10.1016/j.bmcl.2013.04.018., Epub 2013 Apr 17. PMID:23642482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4i5c.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4i5c.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4I5C
  • CSU: Contacts of Structural Units for 4I5C
  • Structure Factors (1491 Kb)
  • Retrieve 4I5C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I5C from S2C, [Save to disk]
  • Re-refined 4i5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I5C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I5C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i5c_A] [4i5c_B] [4i5c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I5C: [TyrKc ] by SMART
    • Other resources with information on 4I5C
  • Community annotation for 4I5C at PDBWiki (http://pdbwiki.org)

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