4IVW Crystal Structure of the Estrogen Receptor alpha Ligand-binding Domain in Complex with Constrained WAY-derivative, 6b date
authors Nwachukwu, J.C., Srinivasan, S., Parent, A.A., Cavett, V., Nowak, J., Hughes, T.S., Kojetin, D.J., Katzenellenbogen, J.A., Nettles, K.W.
compound source
symmetry
R_factor
R_Free 0.2295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.06
ligand 1GJ enzyme
Primary referenceLigand-binding dynamics rewire cellular signaling via estrogen receptor-alpha., Srinivasan S, Nwachukwu JC, Parent AA, Cavett V, Nowak J, Hughes TS, Kojetin DJ, Katzenellenbogen JA, Nettles KW, Nat Chem Biol. 2013 May;9(5):326-32. doi: 10.1038/nchembio.1214. Epub 2013 Mar, 24. PMID:23524984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4ivw.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (4ivw.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (4ivw.pdb3.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 4IVW
  • CSU: Contacts of Structural Units for 4IVW
  • Structure Factors (162 Kb)
  • Retrieve 4IVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IVW from S2C, [Save to disk]
  • Re-refined 4ivw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IVW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IVW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ivw_B] [4ivw_C] [4ivw_A] [4ivw_D] [4ivw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IVW: [HOLI ] by SMART
    • Other resources with information on 4IVW
  • Community annotation for 4IVW at PDBWiki (http://pdbwiki.org)

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