4IXA
Structure of DNA-binding domain of the response regulator SaeR from Staphylococcus epidermidis
date
2013-01-24
authors
Chen, Y.R., Chen, S.C., Yang, C.S., Kuan, S.M., Liu, Y.H., Chen, Y.
compound
source
symmetry
R_factor
R_Free
0.2619
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
2.15
Gene
SE
Gene
Ontology
Chain
Function
Process
Component
A, B
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(39 Kb)
[Save to disk]
Biological Unit Coordinates
(4ixa.pdb1.gz) 19 Kb
Biological Unit Coordinates
(4ixa.pdb2.gz) 17 Kb
CSU:
Contacts of Structural Units
for 4IXA
Structure Factors
(174 Kb)
Retrieve 4IXA in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
4IXA
from
S2C
,
[Save to disk]
Re-refined
4ixa
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 4IXA in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 4IXA
Ramachandran
plot from
PDBSum
Structure-derived information
Electron Density
related parameters from
EDS
Electron Density Server, at Upsala
Dipole
moment, from
Dipole Server
at Weizmann Institute
3D motif for
4IXA
, from
MSDmotif
at EBI
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[4ixa_B]
[4ixa]
[4ixa_A]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domain
found in 4IXA:
[Trans_reg_C ]
by
SMART
Other resources with information on 4IXA
Community annotation for
4IXA
at
PDBWiki
(http://pdbwiki.org)
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