4J6Q Crystal structure of calcium2+-free wild-type CD23 lectin domain (crystal form G) date 2013-02-11
authors Dhaliwal, B., Pang, M.O.Y., Sutton, B.J.
compound source
symmetry
R_factor
R_Free 0.2395
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.54
Primary referenceConformational plasticity at the IgE-binding site of the B-cell receptor CD23., Dhaliwal B, Pang MO, Yuan D, Yahya N, Fabiane SM, McDonnell JM, Gould HJ, Beavil AJ, Sutton BJ, Mol Immunol. 2013 Aug 6;56(4):693-697. doi: 10.1016/j.molimm.2013.07.005. PMID:23933509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4j6q.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (4j6q.pdb2.gz) 88 Kb
  • CSU: Contacts of Structural Units for 4J6Q
  • Structure Factors (243 Kb)
  • Retrieve 4J6Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J6Q from S2C, [Save to disk]
  • Re-refined 4j6q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J6Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J6Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J6Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j6q] [4j6q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J6Q: [CLECT ] by SMART
    • Other resources with information on 4J6Q
  • Community annotation for 4J6Q at PDBWiki (http://pdbwiki.org)

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