4J8O SET7/9 in complex with TAF10K189A peptide and AdoHcy date 2013-02-14
authors Horowitz, S., Trievel, R.C.
compound source
symmetry
R_factor
R_Free 0.22807
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.63
ligand SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConservation and functional importance of carbon-oxygen hydrogen bonding in AdoMet-dependent methyltransferases., Horowitz S, Dirk LM, Yesselman JD, Nimtz JS, Adhikari U, Mehl RA, Scheiner S, Houtz RL, Al-Hashimi HM, Trievel RC, J Am Chem Soc. 2013 Oct 16;135(41):15536-48. doi: 10.1021/ja407140k. Epub 2013, Oct 7. PMID:24093804
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4j8o.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4J8O
  • CSU: Contacts of Structural Units for 4J8O
  • Structure Factors (625 Kb)
  • Retrieve 4J8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J8O from S2C, [Save to disk]
  • Re-refined 4j8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J8O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j8o] [4j8o_A] [4j8o_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J8O: [SET ] by SMART
    • Other resources with information on 4J8O
  • Community annotation for 4J8O at PDBWiki (http://pdbwiki.org)

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