4JDJ Crystal structure of Serine/threonine-protein kinase PAK 4 F461V mutant in complex with Paktide T peptide substrate date 2013-02-25
authors Ha, B.H., Boggon, T.J.
compound source
symmetry
R_factor
R_Free 0.24387
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of a major determinant for serine-threonine kinase phosphoacceptor specificity., Chen C, Ha BH, Thevenin AF, Lou HJ, Zhang R, Yip KY, Peterson JR, Gerstein M, Kim PM, Filippakopoulos P, Knapp S, Boggon TJ, Turk BE, Mol Cell. 2014 Jan 9;53(1):140-7. doi: 10.1016/j.molcel.2013.11.013. Epub 2013, Dec 26. PMID:24374310
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (4jdj.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4JDJ
  • CSU: Contacts of Structural Units for 4JDJ
  • Structure Factors (232 Kb)
  • Retrieve 4JDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JDJ from S2C, [Save to disk]
  • Re-refined 4jdj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JDJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JDJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JDJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jdj_A] [4jdj] [4jdj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JDJ: [S_TKc ] by SMART
    • Other resources with information on 4JDJ
  • Community annotation for 4JDJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science