4JET 2.2A resolution structure of Holo hemophore HasA from Yersinia pestis date
authors Kumar, R., Lovell, S., Battaile, K.P., Rivera, M.
compound source
symmetry
R_factor
R_Free 0.2231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand CL, HEM enzyme
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceThe Hemophore HasA from Yersinia pestis (HasAyp) Coordinates Hemin with a Single Residue, Tyr75, and with Minimal Conformational Change., Kumar R, Lovell S, Matsumura H, Battaile KP, Moenne-Loccoz P, Rivera M, Biochemistry. 2013 Apr 23;52(16):2705-7. doi: 10.1021/bi400280z. Epub 2013 Apr, 11. PMID:23578210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (4jet.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (4jet.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (4jet.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (4jet.pdb4.gz) 33 Kb
  • Biological Unit Coordinates (4jet.pdb5.gz) 34 Kb
  • Biological Unit Coordinates (4jet.pdb6.gz) 34 Kb
  • Biological Unit Coordinates (4jet.pdb7.gz) 33 Kb
  • Biological Unit Coordinates (4jet.pdb8.gz) 33 Kb
  • Biological Unit Coordinates (4jet.pdb9.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4JET
  • CSU: Contacts of Structural Units for 4JET
  • Structure Factors (5329 Kb)
  • Retrieve 4JET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JET from S2C, [Save to disk]
  • Re-refined 4jet structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JET
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JET, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jet_G] [4jet_F] [4jet_C] [4jet_E] [4jet_B] [4jet_H] [4jet_I] [4jet] [4jet_J] [4jet_A] [4jet_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JET
  • Community annotation for 4JET at PDBWiki (http://pdbwiki.org)

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