4JIN X-ray crystal structure of Archaeoglobus fulgidus Rio1 bound to (2E)-N-benzyl-2-cyano-3-(pyridine-4-yl)acrylamide (WP1086) date 2013-03-06
authors Mielecki, M., Krawiec, K., Kiburu, I., Grzelak, K., Wlodzimierz, Z., Kierdaszuk, B., Kowa, K., Fokt, I., Szymanski, S., Piotr, S., Szeja, W., Priebe, W., Lesyng, B., LaRonde-LeBlanc, N.
compound source
symmetry
R_factor
R_Free 0.2408
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 1L7 enzyme
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of novel molecular probes of the Rio1 atypical protein kinase., Mielecki M, Krawiec K, Kiburu I, Grzelak K, Zagorski W, Kierdaszuk B, Kowa K, Fokt I, Szymanski S, Swierk P, Szeja W, Priebe W, Lesyng B, Laronde-Leblanc N, Biochim Biophys Acta. 2013 Mar 20. pii: S1570-9639(13)00125-8. doi:, 10.1016/j.bbapap.2013.03.012. PMID:23523885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (4jin.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4JIN
  • CSU: Contacts of Structural Units for 4JIN
  • Structure Factors (105 Kb)
  • Retrieve 4JIN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JIN from S2C, [Save to disk]
  • Re-refined 4jin structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JIN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JIN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JIN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jin_A] [4jin]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JIN: [RIO ] by SMART
    • Other resources with information on 4JIN
  • Community annotation for 4JIN at PDBWiki (http://pdbwiki.org)

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