4JRT Crystal structure of an A-form RNA duplex containing three GU base pairs date
authors Kondo, J., Dock-Bregeon, A.C., Willkomm, D.K., Hartmann, R.K., Westhof, E.
compound source
symmetry
R_factor
R_Free 0.2275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Primary referenceStructure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet., Kondo J, Dock-Bregeon AC, Willkomm DK, Hartmann RK, Westhof E, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):634-9. doi:, 10.1107/S1744309113013018. Epub 2013 May 24. PMID:23722840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (4jrt.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 4JRT
  • Structure Factors (16 Kb)
  • Retrieve 4JRT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JRT from S2C, [Save to disk]
  • Re-refined 4jrt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JRT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JRT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JRT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jrt_A] [4jrt_B] [4jrt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JRT
  • Community annotation for 4JRT at PDBWiki (http://pdbwiki.org)

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