4KJD RatIntestinal AP expressed in E. coli date 2013-05-03
authors Ghosh, K., Anumula, R.K., Laksmaiah, B.K.
compound source
symmetry
R_factor
R_Free 0.2034
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.21
ligand GOL, MG, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of rat intestinal alkaline phosphatase - Role of crown domain in mammalian alkaline phosphatases., Ghosh K, Mazumder Tagore D, Anumula R, Lakshmaiah B, Pabbisetty K, Singaram S, Matan T, Kallipatti S, Selvam S, Krishnamurthy P, Ramarao M, J Struct Biol. 2013 Sep 27. pii: S1047-8477(13)00258-X. doi:, 10.1016/j.jsb.2013.09.017. PMID:24076154
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (4kjd.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 4KJD
  • CSU: Contacts of Structural Units for 4KJD
  • Structure Factors (1572 Kb)
  • Retrieve 4KJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KJD from S2C, [Save to disk]
  • Re-refined 4kjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KJD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KJD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kjd_B] [4kjd_A] [4kjd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KJD: [alkPPc ] by SMART
    • Other resources with information on 4KJD
  • Community annotation for 4KJD at PDBWiki (http://pdbwiki.org)

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