4KJS Structure of native YfkE date 2013-05-03
authors Wu, M., Tong, S., Zheng, L.
compound source
symmetry
R_factor
R_Free 0.26187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.05
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of Ca2+/H+ antiporter protein YfkE reveals the mechanisms of Ca2+ efflux and its pH regulation., Wu M, Tong S, Waltersperger S, Diederichs K, Wang M, Zheng L, Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11367-72. doi:, 10.1073/pnas.1302515110. Epub 2013 Jun 24. PMID:23798403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (4kjs.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (4kjs.pdb2.gz) 143 Kb
  • CSU: Contacts of Structural Units for 4KJS
  • Structure Factors (306 Kb)
  • Retrieve 4KJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KJS from S2C, [Save to disk]
  • Re-refined 4kjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KJS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KJS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kjs_B] [4kjs] [4kjs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KJS
  • Community annotation for 4KJS at PDBWiki (http://pdbwiki.org)

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