4KJV Crystal structure of XIAP-Bir2 with a bound spirocyclic benzoxazepinone inhibitor. date
authors Lukacs, C.M., Janson, C.A.
compound source
symmetry
R_factor
R_Free 0.23789
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand 1RK, ZN enzyme
Primary referenceOptimization of Benzodiazepinones as Selective Inhibitors of the X-Linked Inhibitor of Apoptosis Protein (XIAP) Second Baculovirus IAP Repeat (BIR2) Domain., Kester RF, Donnell AF, Lou Y, Remiszewski SW, Lombardo LJ, Chen S, Le NT, Lo J, Moliterni JA, Han X, Hogg JH, Liang W, Michoud C, Rupert KC, Mischke S, Le K, Weisel M, Janson CA, Lukacs CM, Fretland AJ, Hong K, Polonskaia A, Gao L, Li S, Solis DS, Aguilar D, Tardell C, Dvorozniak M, Tannu S, Lee EC, Schutt AD, Goggin B, J Med Chem. 2013 Oct 7. PMID:24093940
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4kjv.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (4kjv.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 4KJV
  • CSU: Contacts of Structural Units for 4KJV
  • Structure Factors (239 Kb)
  • Retrieve 4KJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KJV from S2C, [Save to disk]
  • Re-refined 4kjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KJV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KJV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kjv_C] [4kjv] [4kjv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KJV: [BIR ] by SMART
    • Other resources with information on 4KJV
  • Community annotation for 4KJV at PDBWiki (http://pdbwiki.org)

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