4KUI Transcription date May 22, 2013
title Crystal Structure Of N-Terminal Acetylated Yeast Sir3 Bah Do
authors D.Yang, Q.Fang, M.Wang, R.Ren, H.Wang, M.He, Y.Sun, N.Yang, R.M.Xu
compound source
Molecule: Regulatory Protein Sir3
Chain: A
Fragment: Bah Domain, Unp Residues 2-219
Synonym: Silent Information Regulator 3
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Sir3, Cmt1, Mar2, Ste8, Ylr442c, L9753.10
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.599 44.768 60.487 90.00 104.70 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand ACY, AYA, IPA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNalpha-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain., Yang D, Fang Q, Wang M, Ren R, Wang H, He M, Sun Y, Yang N, Xu RM, Nat Struct Mol Biol. 2013 Aug 11. doi: 10.1038/nsmb.2637. PMID:23934152
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4kui.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4KUI
  • CSU: Contacts of Structural Units for 4KUI
  • Structure Factors (544 Kb)
  • Retrieve 4KUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KUI from S2C, [Save to disk]
  • Re-refined 4kui structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KUI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KUI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kui_A] [4kui]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KUI: [BAH ] by SMART
  • Other resources with information on 4KUI
  • Community annotation for 4KUI at PDBWiki (http://pdbwiki.org)

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