4KZ0 Structure of PI3K gamma with Imidazopyridine inhibitors date 2013-05-29
authors Knapp, M.S., Elling, R.A.
compound source
symmetry
R_factor
R_Free 0.2545
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.87
ligand 1UJ, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure guided optimization of a fragment hit to imidazopyridine inhibitors of PI3K., Pecchi S, Ni ZJ, Han W, Smith A, Lan J, Burger M, Merritt H, Wiesmann M, Chan J, Kaufman S, Knapp MS, Janssen J, Huh K, Voliva CF, Bioorg Med Chem Lett. 2013 Jun 12. pii: S0960-894X(13)00719-1. doi:, 10.1016/j.bmcl.2013.06.010. PMID:23820386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (4kz0.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 4KZ0
  • CSU: Contacts of Structural Units for 4KZ0
  • Structure Factors (1143 Kb)
  • Retrieve 4KZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KZ0 from S2C, [Save to disk]
  • Re-refined 4kz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KZ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KZ0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kz0] [4kz0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KZ0: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
    • Other resources with information on 4KZ0
  • Community annotation for 4KZ0 at PDBWiki (http://pdbwiki.org)

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