4L9L Crystal structure of a human Valpha7.2/Vbeta13.2 MAIT TCR in complex with bovine MR1 date
authors Lopez-Sagaseta, J., Adams, E.J.
compound source
symmetry
R_factor
R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.40
ligand KFP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceMAIT Recognition of a Stimulatory Bacterial Antigen Bound to MR1., Lopez-Sagaseta J, Dulberger CL, McFedries A, Cushman M, Saghatelian A, Adams EJ, J Immunol. 2013 Nov 15;191(10):5268-77. doi: 10.4049/jimmunol.1301958. Epub 2013 , Oct 9. PMID:24108697
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (4l9l.pdb1.gz) 263 Kb
  • Biological Unit Coordinates (4l9l.pdb2.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 4L9L
  • CSU: Contacts of Structural Units for 4L9L
  • Structure Factors (165 Kb)
  • Retrieve 4L9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L9L from S2C, [Save to disk]
  • Re-refined 4l9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L9L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l9l] [4l9l_B] [4l9l_C] [4l9l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4L9L: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 4L9L
  • Community annotation for 4L9L at PDBWiki (http://pdbwiki.org)

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