4LDD Crystal Structure of Ebola virus VP40 Hexamer date 2013-06-24
authors Bornholdt, Z.A., Ableson, D.M., Saphire, E.O.
compound source
symmetry
R_factor
R_Free 0.3225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
note 4LDD (Molecule of the Month:pdb178)
Primary referenceStructural Rearrangement of Ebola Virus VP40 Begets Multiple Functions in the Virus Life Cycle., Bornholdt ZA, Noda T, Abelson DM, Halfmann P, Wood MR, Kawaoka Y, Saphire EO, Cell. 2013 Aug 15;154(4):763-74. doi: 10.1016/j.cell.2013.07.015. PMID:23953110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4ldd.pdb1.gz) 155 Kb
  • CSU: Contacts of Structural Units for 4LDD
  • Structure Factors (129 Kb)
  • Retrieve 4LDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LDD from S2C, [Save to disk]
  • Re-refined 4ldd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LDD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LDD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ldd_C] [4ldd_A] [4ldd_B] [4ldd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LDD
  • Community annotation for 4LDD at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science