4LDT The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub date
authors Wiener, R., DiBello, A.T., Lombardi, P.M., Guzzo, C.M., Zhang, X., Matunis, M.J., Wolberger, C.
compound source
symmetry
R_factor
R_Free 0.22318
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand EDO, GLZ, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceE2 ubiquitin-conjugating enzymes regulate the deubiquitinating activity of OTUB1., Wiener R, Dibello AT, Lombardi PM, Guzzo CM, Zhang X, Matunis MJ, Wolberger C, Nat Struct Mol Biol. 2013 Aug 18. doi: 10.1038/nsmb.2655. PMID:23955022
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (4ldt.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 4LDT
  • CSU: Contacts of Structural Units for 4LDT
  • Structure Factors (971 Kb)
  • Retrieve 4LDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LDT from S2C, [Save to disk]
  • Re-refined 4ldt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LDT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LDT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ldt_A] [4ldt] [4ldt_C] [4ldt_D] [4ldt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LDT: [UBCc] [UBQ ] by SMART
    • Other resources with information on 4LDT
  • Community annotation for 4LDT at PDBWiki (http://pdbwiki.org)

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