4LDX	Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 1 (ARF1) in complex with protomor-like sequence ER7	date	2013-06-25
authors	Boer, D.R., Freire-Rios, A., Berg, W.M.A.van.den., Weijers, D., Coll, M.
compound		source
symmetry		R_factor R_Free 0.25932
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.90
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors., Boer DR, Freire-Rios A, van den Berg WA, Saaki T, Manfield IW, Kepinski S, Lopez-Vidrieo I, Franco-Zorrilla JM, de Vries SC, Solano R, Weijers D, Coll M, Cell. 2014 Jan 30;156(3):577-89. doi: 10.1016/j.cell.2013.12.027. PMID:24485461

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk] Biological Unit Coordinates (4ldx.pdb1.gz) 254 Kb CSU: Contacts of Structural Units for 4LDX Structure Factors (370 Kb) Retrieve 4LDX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4LDX from S2C, [Save to disk] Re-refined 4ldx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4LDX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4LDX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4LDX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ldx_B] [4ldx_C] [4ldx_D] [4ldx_A] [4ldx] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4LDX: [B3 ] by SMART

Other resources with information on 4LDX

Community annotation for 4LDX at PDBWiki (http://pdbwiki.org)

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