4LLP Crystal structure of PDE10A2 with fragment ZT401 date 2013-07-09
authors Sridhar, V., Badger, J., Logan, C., Chie-Leon, B., Nienaber, V.
compound source
symmetry
R_factor
R_Free 0.24587
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand 4ZE, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification and Optimization of PDE10A Inhibitors Using Fragment-Based Screening by Nanocalorimetry and X-ray Crystallography., Recht MI, Sridhar V, Badger J, Bounaud PY, Logan C, Chie-Leon B, Nienaber V, Torres FE, J Biomol Screen. 2013 Dec 27. PMID:24375910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4llp.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (4llp.pdb2.gz) 51 Kb
  • Biological Unit Coordinates (4llp.pdb3.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4LLP
  • CSU: Contacts of Structural Units for 4LLP
  • Structure Factors (474 Kb)
  • Retrieve 4LLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LLP from S2C, [Save to disk]
  • Re-refined 4llp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LLP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LLP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4llp_A] [4llp_B] [4llp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LLP: [HDc ] by SMART
    • Other resources with information on 4LLP
  • Community annotation for 4LLP at PDBWiki (http://pdbwiki.org)

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