4LMY Structure of GAS PerR-Zn-Zn date 2013-07-11
authors Lin, C.S., Chao, S.Y., Nix, J.C., Tseng, H.L., Tsou, C.C., Fei, C.H., Ciou, H.S., Jeng, U.S., Lin, Y.S., Chuang, W.J., Wu, J.J., Wang, S.
compound source
symmetry
R_factor
R_Free 0.2389
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDistinct structural features of the peroxide response regulator from group a streptococcus drive DNA binding., Lin CS, Chao SY, Hammel M, Nix JC, Tseng HL, Tsou CC, Fei CH, Chiou HS, Jeng US, Lin YS, Chuang WJ, Wu JJ, Wang S, PLoS One. 2014 Feb 21;9(2):e89027. doi: 10.1371/journal.pone.0089027. eCollection, 2014. PMID:24586487
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4lmy.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4LMY
  • CSU: Contacts of Structural Units for 4LMY
  • Structure Factors (293 Kb)
  • Retrieve 4LMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LMY from S2C, [Save to disk]
  • Re-refined 4lmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LMY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LMY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lmy_B] [4lmy_A] [4lmy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LMY
  • Community annotation for 4LMY at PDBWiki (http://pdbwiki.org)

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