4LP0	Crystal structure of a topoisomerase ATP inhibitor	date	2013-07-14
authors	Basarab, G.S., Manchester, J.I., Bist, S., Boriack-Sjodin, P.A., Dangel, B., Illingsworth, R., Uria-Nickelsen, M., Sherer, B.A., Sriram, S., Eakin, A.E.
compound		source
symmetry		R_factor R_Free 0.20197
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.95
ligand	1YM	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Fragment-to-Hit-to-Lead Discovery of a Novel Pyridylurea Scaffold of ATP Competitive Dual Targeting Type II Topoisomerase Inhibiting Antibacterial Agents., Basarab GS, Manchester JI, Bist S, Boriack-Sjodin PA, Dangel B, Illingworth R, Sherer BA, Sriram S, Uria-Nickelsen M, Eakin AE, J Med Chem. 2013 Oct 29. PMID:24098982

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (4lp0.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 4LP0 CSU: Contacts of Structural Units for 4LP0 Structure Factors (611 Kb) Retrieve 4LP0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4LP0 from S2C, [Save to disk] Re-refined 4lp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4LP0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4LP0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4LP0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4lp0] [4lp0_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4LP0: [HATPase_c] [TOP2c ] by SMART

Other resources with information on 4LP0

Community annotation for 4LP0 at PDBWiki (http://pdbwiki.org)

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