4M0Y Crystal structure of ITK in complex with compound 1 [4-(carbamoylamino)-1-(naphthalen-1-yl)-1H-pyrazole-3-carboxamide] date 2013-08-02
authors Han, S., Caspers, N.L.
compound source
symmetry
R_factor
R_Free 0.2169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand M0Y enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelectively targeting an inactive conformation of IL-2-induced T cell kinase by allosteric inhibitors., Han S, Czerwinski RM, Caspers NL, Limburg DC, Ding W, Wang H, Ohren JF, Rajamohan F, McLellan TJ, Unwalla R, Choi C, Parikh MD, Seth N, Edmonds J, Phillips C, Shakya S, Li X, Spaulding V, Hughes S, Cook A, Robinson C, Mathias JP, Navratilova I, Medley QG, Anderson DR, Kurumbail RG, Aulabaugh A, Biochem J. 2014 Mar 4. PMID:24593284
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4m0y.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4M0Y
  • CSU: Contacts of Structural Units for 4M0Y
  • Structure Factors (232 Kb)
  • Retrieve 4M0Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M0Y from S2C, [Save to disk]
  • Re-refined 4m0y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M0Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M0Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M0Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m0y_A] [4m0y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M0Y: [TyrKc ] by SMART
    • Other resources with information on 4M0Y
  • Community annotation for 4M0Y at PDBWiki (http://pdbwiki.org)

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