4M5E Tse3 structure date 2013-08-08
authors Qian, Y.
compound source
symmetry
R_factor
R_Free 0.1986
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.49
ligand CA, CD, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism., Lu D, Shang G, Zhang H, Yu Q, Cong X, Yuan J, He F, Zhu C, Zhao Y, Yin K, Chen Y, Hu J, Zhang X, Yuan Z, Xu S, Hu W, Cang H, Gu L, Mol Microbiol. 2014 Apr 14. doi: 10.1111/mmi.12616. PMID:24724564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4m5e.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4M5E
  • CSU: Contacts of Structural Units for 4M5E
  • Structure Factors (1279 Kb)
  • Retrieve 4M5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M5E from S2C, [Save to disk]
  • Re-refined 4m5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M5E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M5E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m5e_A] [4m5e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4M5E
  • Community annotation for 4M5E at PDBWiki (http://pdbwiki.org)

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