4M6E The high resolution structure of tyrocidine A reveals an amphipathic dimer date
authors Loll, P.J., Economou, N.J., Nahoum, V.
compound source
symmetry
R_factor
R_Free 0.1422
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 0.95
ligand DPN, MOH, MPD, ORN enzyme
Primary referenceThe high resolution structure of tyrocidine A reveals an amphipathic dimer., Loll PJ, Upton EC, Nahoum V, Economou NJ, Cocklin S, Biochim Biophys Acta. 2014 May;1838(5):1199-207. doi:, 10.1016/j.bbamem.2014.01.033. Epub 2014 Feb 11. PMID:24530898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (4m6e.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 4M6E
  • CSU: Contacts of Structural Units for 4M6E
  • Structure Factors (67 Kb)
  • Retrieve 4M6E in mmCIF format [Save to disk]
  • Re-refined 4m6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M6E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M6E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m6e] [4m6e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4M6E
  • Community annotation for 4M6E at PDBWiki (http://pdbwiki.org)

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