4MBK Crystal structure of K234R inhibitor-resistant variant of SHV beta-lactamase in complex with SA2-13 date
authors Rodkey, E.A., Akker, F.van.den.
compound source
symmetry
R_factor
R_Free 0.21444
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.46
ligand MA4, SA2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePenam sulfones and beta-lactamase inhibition: SA2-13 and the importance of the C2 side chain length and composition., Rodkey EA, Winkler ML, Bethel CR, Pagadala SR, Buynak JD, Bonomo RA, van den Akker F, PLoS One. 2014 Jan 16;9(1):e85892. doi: 10.1371/journal.pone.0085892. eCollection, 2014. PMID:24454944
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (4mbk.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4MBK
  • CSU: Contacts of Structural Units for 4MBK
  • Structure Factors (747 Kb)
  • Retrieve 4MBK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MBK from S2C, [Save to disk]
  • Re-refined 4mbk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MBK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MBK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MBK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mbk] [4mbk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MBK
  • Community annotation for 4MBK at PDBWiki (http://pdbwiki.org)

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