OCA Atlas for 4MEX

4MEX

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

28H, 28J, 28K, 2TL, D4P, MEA, MG, ZN

enzyme

Gene

BN17 ; BN17 ; BN17 ; K758 ; LF82 ; LF82 ; LF82

Gene
Ontology

Chain	Function	Process	Component
E, K
H, B, A, G
I, C
J, D
L, F	bacterial sigma factor activ...

Primary reference

Transcription inhibition by the depsipeptide antibiotic salinamide A., Degen D, Feng Y, Zhang Y, Ebright KY, Ebright YW, Gigliotti M, Vahedian-Movahed H, Mandal S, Talaue M, Connell N, Arnold E, Fenical W, Ebright RH, Elife. 2014 Apr 30;3:e02451. doi: 10.7554/eLife.02451. PMID:24843001

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1041 Kb) [Save to disk]

Biological Unit Coordinates (4mex.pdb1.gz) 529 Kb

Biological Unit Coordinates (4mex.pdb2.gz) 504 Kb

LPC: Ligand-Protein Contacts for 4MEX

CSU: Contacts of Structural Units for 4MEX

Structure Factors (950 Kb)

Retrieve 4MEX in mmCIF format [Save to disk]

Re-refined 4mex structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4MEX in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4mex] [4mex_A] [4mex_B] [4mex_C] [4mex_D] [4mex_E] [4mex_F] [4mex_G] [4mex_H] [4mex_I] [4mex_J] [4mex_K] [4mex_L] [4mex_M] [4mex_N]

SWISS-PROT database:

Domains found in 4MEX: [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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