4MJ9 lambda-[Ru(TAP)2(dppz-10-Me)]2+ bound to a synthetic DNA oligomer date
authors Hall, J.P., Cardin, C.J.
compound source
symmetry
R_factor
R_Free 0.09564
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 0.97
ligand 2J0, BA, CL enzyme
Primary referencePreferred orientation in an angled intercalation site of a chloro-substituted {Lambda}-[Ru(TAP)2(dppz)]2+ complex bound to d(TCGGCGCCGA)2., Hall JP, Beer H, Buchner K, Cardin DJ, Cardin CJ, Philos Trans A Math Phys Eng Sci. 2013 Jun 17;371(1995):20120525. doi:, 10.1098/rsta.2012.0525. Print 2013. PMID:23776304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (4mj9.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4MJ9
  • CSU: Contacts of Structural Units for 4MJ9
  • Structure Factors (378 Kb)
  • Retrieve 4MJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MJ9 from S2C, [Save to disk]
  • Re-refined 4mj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MJ9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MJ9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mj9_A] [4mj9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MJ9
  • Community annotation for 4MJ9 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science