4MK7 Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with inhibitor 2 (3-(3-tert-butyl-4-methoxyphenyl)pyridin-2(1H)-one) date 2013-09-04
authors Harris, S.F., Wong, A.
compound source
symmetry
R_factor
R_Free 0.2716
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand 28O, DMS, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of a Novel Series of Potent Non-Nucleoside Inhibitors of Hepatitis C Virus NS5B., Schoenfeld RC, Bourdet DL, Brameld KA, Chin E, de Vicente J, Fung A, Harris SF, Lee E, Le Pogam S, Leveque V, Li J, Lui AS, Najera I, Rajyaguru S, Sangi M, Steiner S, Talamas FX, Taygerly JP, Zhao J, J Med Chem. 2013 Sep 27. PMID:24069953
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (4mk7.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (4mk7.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4MK7
  • CSU: Contacts of Structural Units for 4MK7
  • Structure Factors (351 Kb)
  • Retrieve 4MK7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MK7 from S2C, [Save to disk]
  • Re-refined 4mk7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MK7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MK7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MK7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mk7] [4mk7_A] [4mk7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MK7
  • Community annotation for 4MK7 at PDBWiki (http://pdbwiki.org)

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