4MKP Crystal structure of human cGAS apo form date 2013-09-05
authors Kato, K., Ishii, R., Ishitani, R., Nureki, O.
compound source
symmetry
R_factor
R_Free 0.2523
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand ZN enzyme
Primary referenceStructural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS., Kato K, Ishii R, Goto E, Ishitani R, Tokunaga F, Nureki O, PLoS One. 2013 Oct 7;8(10):e76983. doi: 10.1371/journal.pone.0076983. PMID:24116191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (4mkp.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 4MKP
  • CSU: Contacts of Structural Units for 4MKP
  • Structure Factors (190 Kb)
  • Retrieve 4MKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MKP from S2C, [Save to disk]
  • Re-refined 4mkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MKP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MKP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mkp_A] [4mkp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MKP: [Mab-21 ] by SMART
    • Other resources with information on 4MKP
  • Community annotation for 4MKP at PDBWiki (http://pdbwiki.org)

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