4MLB Reverse polarity of binding pocket suggests different function of a MOP superfamily transporter from Pyrococcus furiosus Vc1 (DSM3638) date
authors Malviya, V.N., Nonaka, T., Muenke, C., Koepke, J., Michel, H.
compound source
symmetry
R_factor
R_Free 0.2310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand CL, CXE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • xenobiotic transmembrane tra...


    • Primary referenceInsights on Na(+) binding and conformational dynamics in multidrug and toxic compound extrusion transporter NorM., Song J, Ji C, Zhang JZ, Proteins. 2014 Feb;82(2):240-9. doi: 10.1002/prot.24368. Epub 2013 Sep 17. PMID:23873591
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (4mlb.pdb1.gz) 153 Kb
  • Biological Unit Coordinates (4mlb.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (4mlb.pdb3.gz) 79 Kb
  • Biological Unit Coordinates (4mlb.pdb4.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4MLB
  • CSU: Contacts of Structural Units for 4MLB
  • Structure Factors (1035 Kb)
  • Retrieve 4MLB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MLB from S2C, [Save to disk]
  • Re-refined 4mlb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MLB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MLB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MLB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mlb_B] [4mlb_C] [4mlb_D] [4mlb] [4mlb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MLB
  • Community annotation for 4MLB at PDBWiki (http://pdbwiki.org)

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