4MN3 Chromodomain antagonists that target the polycomb-group methyllysine reader protein Chromobox homolog 7 (CBX7) date 2013-09-09
authors Chakravarthi, S., Daze, K., Douglas, S., Quon, T., Dev, A., Peng, F., Heller, M., Boulanger, M.J., Wulff, J., Hof, F.
compound source
symmetry
R_factor
R_Free 0.21265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.54
ligand ACE, EDO, M3L, MG, NH2, P33 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChromodomain Antagonists That Target the Polycomb-Group Methyllysine Reader Protein Chromobox Homolog 7 (CBX7)., Simhadri C, Daze KD, Douglas SF, Quon TT, Dev A, Gignac MC, Peng F, Heller M, Boulanger MJ, Wulff JE, Hof F, J Med Chem. 2014 Mar 26. PMID:24625057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (4mn3.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 4MN3
  • CSU: Contacts of Structural Units for 4MN3
  • Structure Factors (181 Kb)
  • Retrieve 4MN3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MN3 from S2C, [Save to disk]
  • Re-refined 4mn3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MN3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MN3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MN3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mn3] [4mn3_A] [4mn3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MN3: [CHROMO ] by SMART
    • Other resources with information on 4MN3
  • Community annotation for 4MN3 at PDBWiki (http://pdbwiki.org)

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