4MRE Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule date 2013-09-17
authors Liu, L.K., Finzel, B.
compound source
symmetry
R_factor
R_Free 0.2234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.58
ligand 2C9, DMS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors., Liu LK, Finzel BC, J Med Chem. 2014 Mar 27;57(6):2714-25. doi: 10.1021/jm5000276. Epub 2014 Mar 7. PMID:24606063
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (4mre.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 4MRE
  • CSU: Contacts of Structural Units for 4MRE
  • Structure Factors (936 Kb)
  • Retrieve 4MRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MRE from S2C, [Save to disk]
  • Re-refined 4mre structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MRE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MRE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mre] [4mre_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4MRE: [LINK ] by SMART
    • Other resources with information on 4MRE
  • Community annotation for 4MRE at PDBWiki (http://pdbwiki.org)

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